Inserted Video Positioning Problem

I insert a .flv or .swf video via the Presenter tab. I have a border made with shapes in PowerPoint. The layer order has the border on top of the video in the slide. When I publish it, the layer order is not honored, and the video is alway on top of everything.

Please let me know if there is a setting in the video properties I can change, because the same videos work with the border when importing the video from Powerpoint directly. (I cant do it this way for other reasons)

Thanks for your help if there is a solution.

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